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  • NYU Dataset

    Intra-axonal Space Segmentation from 3D Scanning Electron Microscopy (SEM) of the Mouse Brain Genu of Corpus Callosum

    Authors
    Hong-Hsi Lee
    Dmitry S. Novikov
    Els Fieremans
    Description

    This dataset includes 3D scanning electron microscopy (SEM) images of a female mouse corpus callosum and MATLAB code for random walker (RaW) segmentations of myelinated axons. The code additionally characterizes inner axonal diameters and fiber orientation dispersion within segments of the intra-axonal spaces and myelin sheaths. In the study, a female 8-week-old C57BL/6 mouse was perfused trans-cardiacally...

    Subject
    Anatomy
    Neuroscience
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  • NYU Dataset

    High-density neural recordings of macaque monkeys performing a direction discrimination task

    Authors
    Roozbeh Kiani
    Christopher J. Cueva
    John B. Reppas
    Description

    The investigators collected simultaneous recordings using multi-channel electrode arrays attached to the prearcuate gyrus of macaque monkeys who performed a direction discrimination task with fixed stimulus duration. In the study, 96-channel multielectrode arrays were used to record from neural populations in area 8Ar of the prearcuate gyrus of three macaque monkeys, while they performed a direction...

    Subject
    Neuroscience
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  • NYU Dataset

    Evaluation of Metronomic Chemotherapy Response Using Diffusion and Dynamic Contrast-enhanced MRI

    Alternate Title(s)
    Evaluation of Metronomic Chemotherapy Response Using dMRI and DCE MRI
    Authors
    Mehran Baboli
    Kerryanne V. Winters
    Melanie Freed
    Jin Zhang
    1 more author(s)...
    Description

    The dataset contains data collected from twelve Balb/c mice with metastatic breast cancer (4T1 mammary tumors). Six mice were in the control group and six mice were treated with 5-Fluorouracil (5FU) for metronomic chemotherapy for two weeks. Diffusion MRI (dMRI) and Dynamic Contrast-enhanced MRI (DCE-MRI) images were collected at baseline and post-treatment. Immunohistochemically (IHC) stains and measurements...

    Subject
    Cancer
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  • NYU Dataset

    Recordings of theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

    Authors
    Peter C. Petersen
    Gyorgy Buzsaki
    Description

    Electrophysiological recordings were obtained from male rats who were subjected to localized cooling of their medial septum (MS) prior to completing behavioral tasks. The MS is critical in theta generation. Therefore, temperature manipulation of the MS was used to test these models. Approximately 40 control trials were completed, followed by exposure to dry ice to reduce MS temperature for 20 to 60...

    Subject
    Neuroscience
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  • NYU Dataset

    3D-printable model and electrophysiological recordings for a headgear system for freely-moving rodents

    Authors
    Mihaly Voroslakos
    Peter C. Petersen
    Balázs Vöröslakos
    Gyorgy Buzsaki
    Description

    The Buzsáki Lab has shared designs for a 3D-printed metal microdrive and head cap system for freely-moving rodents and sample electrophysiological recordings. The modular design allows for recovery and reuse of silicon probes in multiple experiments with mice and Long-Evans rats. The .step files for the metal microdrive are optimized for stainless steel 316L in 20 micrometer resolution and aluminum...

    Subject
    Neuroscience
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  • Modeling Bayesian inference with incomplete knowledge in monkeys presented with a direction discrimination task with post-decision wagering

    Authors
    Koosha Khalvati
    Roozbeh Kiani
    Rajesh P. N. Rao
    Description

    The investigators collected behavioral data from two macaque monkeys (M1 and M2) who were presented with a direction discrimination task with post-decision wagering. These monkeys received prior training to report the net direction of motion of a set of randomly moving dots. In each trial, the subject fixed their gaze on an initial fixation point, then red dots would appear on the periphery of the...

    Subject
    Neuroscience
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    Local Expert
    Roozbeh Kiani
  • NYU Dataset

    Switch-like and persistent memory formation in individual Drosophila larvae

    Authors
    Amanda Lesar
    Javan Tahir
    Jason Wolk
    Marc Gershow
    Description

    Using a Y-shaped maze, several experiments were developed to assess conditions of associative learning among fruit fly larvae. Prior to the start of the experiments, some fruit fly larvae were fed a diet of all-trans-retinal (ATR), which is a co-factor for csChrimson activation (eliciting escape behavior in flies which perceive red light). A subgroup of larvae who were fed ATR also received cycloheximide...

    Subject
    Neuroscience
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  • NYU Dataset

    Behavioral and Electrophysiology Data Indicates Wind Direction is Decoded by Central Neurons in Drosophila

    Authors
    Marie P. Suver
    Andrew M. M. Matheson
    Sinekdha Sarkar
    Matthew Damiata
    2 more author(s)...
    Description

    Wind is a major navigational cue for insects and this study examined how wind direction is decoded by central neurons in the insect brain. They determined that flies combine signals from both antennae to orient to wind during olfactory search behavior. In Drosophila, movements of the antennae are detected by mechanosensory neurons, known as Johnston’s Organ (JO) neurons. The JO neurons project from...

    Subject
    Neuroscience
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  • NYU Dataset

    Studying Zika Virus Evolution In Vivo Using Insect-to-Mouse Transmission Model

    Authors
    Katherine E. E. Johnson
    Maria G. Noval
    Margarita V. Rangel
    Elfie De Jesus
    5 more author(s)...
    Description

    Arboviruses are caused by a group of viruses spread to people (host) by the bite of infected insects (vector). It is within these hosts that arboviruses replicate and undergo genomic evolution. However, how arboviruses evolve, are transmitted, or cause disease in nature remain unclear. Therefore, this study established a Zika virus (ZIKV) vector-borne transmission system in immunocompromised mice to...

    Subject
    Genomics
    Infectious Disease
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  • NYU Dataset

    Electrophysiology and Imaging Data Identified Central Complex Neurons that Encode Airflow Direction in Drosophila

    Authors
    Timothy A. Currier
    Andrew M. M. Matheson
    Katherine I. Nagel
    Description

    This data was collected to identify the brain regions and circuit organizations that support navigation. In insects, the central complex (CX) is thought to control many aspects of navigation. The CX is a highly organized neuropil, which consists of the protocerebral bridge, the ellipsoid body, the fan-shaped body, and the paired noduli. This study contains electrophysiology, imaging, and behavioral...

    Subject
    Neuroscience
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    Free to All